PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015364.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 281aa    MW: 31448 Da    PI: 6.7988
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015364.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.66.7e-4241411127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                  lppGf+F+Pt+eel+++yL++k++g +      ++++i+ v iy+++Pw+Lp+    +++++ ++w+fF++r++++a+g r++r t++g+Wkatg+  
  Pbr015364.1   4 LPPGFKFSPTEEELISFYLQNKLDGMSedlnRVVDRIIPVVYIYEFNPWELPQaageAIHGDPEQWFFFIPRQESEARGGRQRRLTTTGFWKATGSPS 101
                  79***********************9966533334479999**********9646655666778********************************** PP

          NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                  +v+s+   + +++gl++t+vfy+grap+g+kt+W m+ey+
  Pbr015364.1 102 TVYSSnsnNYRAIGLRRTMVFYTGRAPHGKKTEWKMNEYK 141
                  ****95544455***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-433181IPR003441NAC domain
PROSITE profilePS5100546.4954181IPR003441NAC domain
PfamPF023658.3E-225141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEDLPPGFKF SPTEEELISF YLQNKLDGMS EDLNRVVDRI IPVVYIYEFN PWELPQAAGE  60
AIHGDPEQWF FFIPRQESEA RGGRQRRLTT TGFWKATGSP STVYSSNSNN YRAIGLRRTM  120
VFYTGRAPHG KKTEWKMNEY KAIEIHADDN NQPSMAASSS NPSTPTPSLR QEFGLCRVYK  180
KSKCLRAFDR RPPGIEITRK PNLNIQAAPA QAADLLDQGL TTSNRNPQNM EGRTNSSSSE  240
SSSSGGYGSQ SSQPEQSGTL PRAVDNEAIW DLDQLIKFLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-30418117165NO APICAL MERISTEM PROTEIN
1ut4_B2e-30418117165NO APICAL MERISTEM PROTEIN
1ut7_A2e-30418117165NO APICAL MERISTEM PROTEIN
1ut7_B2e-30418117165NO APICAL MERISTEM PROTEIN
3swm_A3e-30418120168NAC domain-containing protein 19
3swm_B3e-30418120168NAC domain-containing protein 19
3swm_C3e-30418120168NAC domain-containing protein 19
3swm_D3e-30418120168NAC domain-containing protein 19
3swp_A3e-30418120168NAC domain-containing protein 19
3swp_B3e-30418120168NAC domain-containing protein 19
3swp_C3e-30418120168NAC domain-containing protein 19
3swp_D3e-30418120168NAC domain-containing protein 19
4dul_A2e-30418117165NAC domain-containing protein 19
4dul_B2e-30418117165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17486RQESEARGGRQRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372524.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLM5VSR51e-128M5VSR5_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s22580.17e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-55NAC domain containing protein 90